Publications

• Liang Li, Edward C. Cox, and Henrik Flyvbjerg
  "Dicty Dynamics": Dictyostelium motility as persistent random motion
  Phys. Biol. , to appear (2011)

• Morten Bo Mikkelsen, Walter Reisner, Henrik Flyvbjerg, and Anders Kristensen
  Propagation Modes of Pressure-Driven DNA in Nanogroove Arrays:
  Complex Dynamical Behavior in a Nanofabricated Device.
  Nano Lett.11, 1598–1602 (2011); doi:10.1021/nl1044764  
  

• S. F. Nørrelykke and H. Flyvbjerg
  Harmonic Oscillator in Heat Bath: Exact simulation of time-lapse-recorded data, exact analytical benchmark statistics
  Phys. Rev. E 83, 041103 (2011) (10 pages); doi:10.1103/PhysRevE.83.041103         
  

• P. H. Hagedorn, C. M. Burton, E. Sahar, E. Domany, I. R. Cohen, H. Flyvbjerg, M. Iversen
  Integrative analysis correlates donor transcripts to recipient autoantibodies in primary graft dysfunction after lung transplantation
  Immunology 132, 394–400 (2011); doi:10.1111/j.1365-2567.2010.03373.x 
  

2010 

• Lasse Højlund Thamdrup, Jonas Nyvold Pedersen, Henrik Flyvbjerg, Niels B. Larsen, Anders Kristensen 
  Nanoimprinted polymer chips for light induced local heating of liquids in micro- and nanochannels 
  Proc. SPIE 7764, 77640I (2010) (13 pages); doi:10.1117/12.860221
  
• Nanoimprinted polymer chips for light induced local heating of liquids in micro- and nanochannels 
  Lasse Højlund Thamdrup, Jonas Nyvold Pedersen, Henrik Flyvbjerg, Niels B. Larsen, Anders Kristensen                               Proc. SPIE 7764, 77640I (2010) (13 pages); doi:10.1117/12.860221
  
• Integrative analysis correlates donor transcripts to recipient autoantibodies in primary graft dysfunction after lung transplantation
  P. H. Hagedorn, C. M. Burton, E. Sahar, E. Domany, I. R. Cohen, H. Flyvbjerg, M. Iversen
  Immunology , published online 11 November (2010); doi:10.1111/j.1365-2567.2010.03373.x 
  
• One can localize better than chi-square fitting to a 2D Gaussian
  Henrik Flyvbjerg 
  Comment to Q&A: Single-molecule localization microscopy for biological imaging
  by Ann L McEvoy, Derek Greenfield, Mark Bates and Jan Liphardt,
  BMC Biology 8:106 (2010); doi:10.1186/1741-7007-8-106
   
• Single Molecule Denaturation Mapping of DNA in Nanofluidic Channels
  Walter Reisner, Asli Silataroglu, Niels B. Larsen, Anders Kristensen, Niels Tommerup, Jonas O. Tegenfeldt, and Henrik Flyvbjerg, Proc. Natl. Acad. Sci. (USA) 107, 13294-13299 (2010); doi:10.1073/pnas.1007081107 
  
  See Research Highlight "Melting trapped DNA" in Nature Methods 7 No.9, p.678 (September 2010) 
  and "Danskere smelter sig til kort over genomer" in Danish weekly newspaper for engineers, Ingeniøren,  September 24, 2010 , pp.14-15
   
• Power Spectrum Analysis with Least-Squares Fitting: 
  Built-in bias and its elimination, with application to optical tweezers and AFM cantilevers 
  S. F. Nørrelykke and H. Flyvbjerg
  Rev. Sci. Instrum. 81, 075103 (2010) (16 pages); doi:10.1063/1.3455217 
   
• Chronic rejection of a lung transplant is characterized by a profile of specific autoantibodies
  P. H. Hagedorn, C. M. Burton, J. Carlsen, D. Steinbrüchel, C. B. Andersen, E. Sahar, E. Domany, I. R. Cohen, H. Flyvbjerg, M. Iversen,
  Immunology 130, 427-435 (2010); doi:10.1111/j.1365-2567.2010.03246.x 
   
• Optimized localization-analysis for single-molecule tracking and super-resolution microscopy 
  Kim I. Mortensen, L. Stirling Churchman, James A. Spudich, and Henrik Flyvbjerg
  Nature Methods 7, 377-381 (2010); doi:10.1038/nmeth.1447 
  
  
• See News and Views: Daniel R. Larson: The economy of photons. Nature Methods 7, 357-359 (2010). 
  "This theory [...] is the most complete theoretical description of localization microscopy to date."
   
• A little goes a long way: Now extra-galactic and into very deep space
  Henrik Flyvbjerg
  DTU Nanotech Newsletter p.8 (February, 2010).

2009

• Combining Single-Molecule Optical Trapping and Small-Angle X-Ray Scattering Measurements to Compute the Persistence Length of a Protein ER/K α-Helix
  S. Sivaramakrishnan, J. Sung, M. Ali, S. Doniach, H. Flyvbjerg, J. A. Spudich
  Biophys. J. 97, 2993-2999 (2009); doi:10.1016/j.bpj.2009.09.009 
  
• Directed Self-Assembly of Single DNA Molecules in a Nanoslit via Embedded Nanopit Arrays
  Walter Reisner, Niels B. Larsen, Henrik Flyvbjerg, Jonas O. Tegenfeldt and Anders Kristensen
  Proc. Natl. Acad. Sci. (USA) 106, 79-84 (2009); doi:10.1073/pnas.0811468106  

2008

• In situ viscometry by optical trapping interferometry
  Camilo Guzmán, Henrik Flyvbjerg, Roland Köszali, Carole Escoffet, Lázló Forró, and Sylvia Jeney
  Appl. Phys. Lett. 93, 184102 (2008) (3 pages); doi:10.1063/1.3020713 
   
• Cell Motility as Random Motion: A review
  David Selmeczi, Liang Li, Lykke I. I. Pedersen, Simon F. Nørrelykke, Peter H. Hagedorn, Stephan Mosler, Niels B. Larsen, Edward C. Cox, and Henrik Flyvbjerg
  Eur. Phys. J. Special Topics 157, 1-15 (2008); doi:10.1140/epjst/e2008-00626-x 
  

2007

• Strong low-pass filtering effects on water vapor flux measurements with closed-path eddy correlation systems
  Andreas Ibrom, Ebba Dellwik, Henrik Flyvbjerg, Niels Otto Jensen, Kim Pilegaard
  Agric. Forest Meteorol. 147, 140–156 (2007); doi:10.1016/j.agrformet.2007.07.007 
   
• Experimental investigation of bubble formation during capillary filling of SiO2 nanoslits
  Lasse Højlund Thamdrup, Fredrik Persson, Henrik Bruus, Anders Kristensen, and Henrik Flyvbjerg
  Appl. Phys. Lett. 91, 63505 (2007) (3 pages); doi: 10.1063/1.2801397 
   
• Nanoconfinement-Enhanced Conformational Response of Single DNA Molecules to Changes in Ionic Environment
  Walter Reisner, Jason P. Beech, Niels B. Larsen, Henrik Flyvbjerg, Anders Kristensen, Jonas O. Tegenfeldt
  Phys. Rev. Lett. 99, 058302 (2007) (4 pages); doi:10.1103/PhysRevLett.99.058302 
   
• Brownian Motion after Einstein and Smoluchowski: Some new applications and new experiments
  D. Selmeczi, S. F. Tolic-Nørrelykke, E. Schäffer, P. H. Hagedorn, S. Mosler, K. Berg-Sørensen, N. B. Larsen, and H. Flyvbjerg
  Acta Phys. Pol. B38, 2407-2431 (2007).  
  
• Comment on "Direct Measurement of the Oscillation Frequency in an Optical-Tweezers Trap by Parametric Excitation"
  Lykke Pedersen and Henrik Flyvbjerg
  Phys. Rev. Lett., 98, 189801 (2007); doi:10.1103/PhysRevLett.98.189801 
  [ See also experimental Comment ] and [ authors' answer.]
   
• Why is the Microtubule Lattice Helical?
  V. Hunyadi, D. Chrétien, H. Flyvbjerg and I. M. Jánosi
  Biology of the Cell, 99, 117-128 (2007); doi:10.1042/BC20060059
  Cover page (personal copy) 
   
• Brownian Motion after Einstein: Some new applications and new experiments
  D. Selmeczi, S. Tolic-Nørrelykke, E. Schäfer, P. H. Hagedorn, S. Mosler, K. Berg-Sørensen, N. B. Larsen, and H. Flyvbjerg
  In Controlled Nanoscale Motion in Biological and Artificial Systems
  proceedings of Nobel Symposium 131, Bäckaskog Castle, Sweden, June 13-17, 2005.
  Heiner Linke and Alf Månsson (Eds)
  Springer Lecture Notes in Physics, Vol.711, pp.181-199
  (Springer-Verlag, Berlin Heidelberg New York; 2007.)
  [arxiv.org/abs/physics/0603142] 
   
• When is a Distribution Not a Distribution, and Why Would You Care:
  Single-molecule Measurements of Repressor Protein 1-D Diffusion on DNA
  Y. M. Wang, Henrik Flyvbjerg, Edward C. Cox, and Robert H. Austin
  In Controlled Nanoscale Motion in Biological and Artificial Systems
  proceedings of Nobel Symposium 131, Bäckaskog Castle, Sweden, June 13-17, 2005
  Heiner Linke and Alf Månsson (Eds)
  Springer Lecture Notes in Physics, Vol.711, pp.217-240
  (Springer-Verlag, Berlin Heidelberg New York; 2007.) 
   

2006

• Calibration of optical tweezers with positional detection in the back-focal-plane
  S. F. Tolic-Nørrelykke, E. Schäffer, J. Howard, F. S. Pavone, F. Jülicher, and H. Flyvbjerg
  Rev. Sci. Instrum. 77, 103101 (2006) (11 pages); doi:10.1063/1.2356852 
   
• Quantitative Studies of Subdiffusion in Living Cells and Actin Networks
  Emilia-Laura Munteanu, Anja Lea Olsen, Iva Tolic-Nørrelykke, Henrik Flyvbjerg, Lene Oddershede, and Kirstine Berg-Sørensen
  Biophys. Rev. Lett. 1, 411-421 (2006); doi:10.1142/S1793048006000343 
   
• tweezercalib 2.1: Faster version of MatLab package for precise calibration of optical tweezers
  Poul Martin Hansen, Iva Marija Tolic-Nørrelykke, Henrik Flyvbjerg, Kirstine Berg-Sørensen
  Comp. Phys. Comm. 175, 572-573 (2006); doi:10.1016/j.cpc.2006.07.009 
   
• Power Spectrum Analysis for Optical Tweezers, II:
  Laser Wavelength Dependence of Parasitic Filtering, and How to Achieve High Band-Width
  K. Berg-Sørensen, E. J. G. Peterman, T. Weber, C. F. Schmidt, and H. Flyvbjerg
  Rev. Sci. Instrum. 77, 063106 (2006) (10 pages); doi:10.1063/1.2204589 
   
• Strong physical constraints on sequence-specific target location by proteins on DNA molecules
  H. Flyvbjerg, S. A. Keatch, and D. T. F. Dryden
  Nucleic Acids Res. 34, 2550-2557 (2006); doi:10.1093/nar/gkl271 
  [Supplementary material] 
   
• The Free NADH Concentration Is Kept Constant in Plant Mitochondria under Different Metabolic Conditions
  M. R. Kasimova, J. Grigiene, K. Krab, P. H. Hagedorn, H. Flyvbjerg, P. E. Andersen, and I. M. Møller
  The Plant Cell 18, 688-698 (2006); doi:10.1105/tpc.105.039354 
   
• tweezercalib 2.0: Faster version of MatLab package for precise calibration of optical tweezers
  P. Martin Hansen, I. M. Tolic-Nørrelykke, H. Flyvbjerg, K. Berg-Sørensen
  Comp. Phys. Comm. 174, 518-520 (2006); doi:10.1016/j.cpc.2005.11.007 
   
• A Non-Gaussian Distribution Quantifies Distances Measured with Fluorescence Localization Techniques
  L. S. Churchman, H. Flyvbjerg, and J. A. Spudich
  Biophys. J. 90, 668-671 (2006); doi:10.1529/biophysj.105.065599 
   
• Low-pass filtering of the latent heat flux
  Ibrom, A.; Dellwik, E.; Jensen, N.O.; Flyvbjerg, H.; Pilegaard, K.
  In Proceedings of BACCI, NECC and FCoE activities 2005. Book A
  Kulmala, M.; Lindroth, A.; Ruuskanen, T.M. (eds.),
  (Finnish Association for Aerosol Research, Helsinki, 2006)
  (Report Series in Aerosol Science, no. 81A) p. 207-210
   

2005

• Tankelæsning med EEG og supercomputere
  H. Flyvbjerg
  KVANT-Tidsskrift for Fysik of Astronomi, No.3, 4-8 (September, 2005)
  Special issue on biological physics.
  (Article in Danish for general physics readership.)
  [ PDF (251kB)] [Link to journal's issue (3M)]
   
• Cell Motility as Persistent Random Motion: Theories from Experiments
  D. Selmeczi, S. Mosler, P. H. Hagedorn, N. B. Larsen, and H. Flyvbjerg
  Biophys. J. 89, 912-931 (2005); doi:10.1529/biophysj.105.061150
  [ Personal PDF copy (1052kB)]
   
• Brownske bevægelser som model for mikro-organismers motilitet
  H. Flyvbjerg, D. Selmeczi, P. H. Hagedorn, N. B. Larsen
  KVANT-Tidsskrift for Fysik of Astronomi, No.2, 17-20 (May, 2005)
  Special issue celebrating the Einstein Centennial.
  (Article in Danish for general physics readership.)
  [ PDF (550kB)] [Link to journal's issue]
   
• Brownske bevægelser, fra Einstein til optiske pincetter
  H. Flyvbjerg, K. Berg-Sørensen, L. Oddershede
  KVANT-Tidsskrift for Fysik of Astronomi, No.2, 6-9 (May, 2005)
  Special issue celebrating the Einstein Centennial.
  (Article in Danish for general physics readership.)
  [ PDF (516kB)] [Link to journal's issue]
   
• The colour of thermal noise in classical Brownian motion:
  a feasibility study of direct experimental observation
  K. Berg-Sørensen and H. Flyvbjerg
  Invited contribution to Einstein Centennial Issue 'Focus on Brownian Motion and Diffusion in the 21st Century.'
  New J. Phys. 7, article No.38 (10 pages) (2005); doi:10.1088/1367-2630/7/1/038
  [ Personal PDF copy (198kB)]
   

2004

• Editorial: Complexity and Criticality
  P. Alstrøm, T. Bohr, K. Christensen, H. Flyvbjerg, M. H. Jensen, B. Lautrup and K. Sneppen
  Physica A 340, iv-vi (2004)
  [ PDF (358kB)] [Link to journal's HTML-version]
   
• Self-organized critical pinball machine
  H. Flyvbjerg
  Physica A 340, 552-558 (2004)
  [ PDF (197kB)] [Link to journal's HTML-version]
   
• MatLab program for precision calibration of optical tweezers
  I. M. Tolic-Nørrelykke, K. Berg-Sørensen and H. Flyvbjerg
  Comp. Phys. Comm. 159, 225-240 (2004)
  [ PDF (505kB)] [ Link to journal's HTML-version]
   
• Power Spectrum Analysis for Optical Tweezers
  K. Berg-Sørensen and H. Flyvbjerg
  Rev. Sci. Instrum. 75, 594-612 (2004); doi:10.1063/1.1645654
  [ PDF (974kB)]
   
• Modeling NADH turnover in plant mitochondria
  P. H. Hagedorn, H. Flyvbjerg, and I. M. Møller
  Physiologia Plantarum 120 370-385 (2004)
  [ PDF (603kB)]
   
• Quantitative distinction between bound and free NADH in biological systems
  Marina R. Kasimova, Klaas Krab, Jurga Grigiene, Peter E. Andersen, Peter Hagedorn, Henrik K. Flyvbjerg, Ian M. Moller,
  Proc. SPIE Int. Soc. Opt. Eng. 5322, 42-51 (2004)
  Imaging, Manipulation, and Analysis of Biomolecules, Cells, and Tissues II;
  Dan V. Nicolau, Joerg Enderlein, Robert C. Leif, Daniel L. Farkas; Eds.
  [ Link to journal's HTML abstract and PDF-version]
   
• Optical Tweezers as a Tool of Precision: A Case Study of Single Molecule Mobility
  Kirstine Berg-Sørensen, Lene Oddershede, and Henrik K. Flyvbjerg
  Proc. SPIE Int. Soc. Opt. Eng. 5322, 64-74 (2004)
  Imaging, Manipulation, and Analysis of Biomolecules, Cells, and Tissues II;
  Dan V. Nicolau, Joerg Enderlein, Robert C. Leif, Daniel L. Farkas; Eds.
  [ Link to journal's HTML abstract and PDF-version] [ Link to my personal PDF-copy (244kB)]
   
• Resonant effects in a voltage-activated channel gating
  Ewa Gudowska-Nowak, Bartlomiej Dybiec, Henrik Flyvbjerg
  Proc. SPIE 5467, 223-234 (2004)
  Fluctuations and Noise in Biological, Biophysical, and Biomedical Systems II;
  Derek Abbott, Sergey M. Bezrukov, Andras Der, Angel Sanchez; Eds.
  [ Link to journal's HTML abstract and PDF-version]
   
• Parasitic filtering in position detection systems for optical tweezers
  Kirstine Berg-Sørensen, Erwin J. Peterman, Lene B. Oddershede, Meindert van Dijk, Ernst-Ludwig Florin, Christoph F. Schmidt, Henrik Flyvbjerg
  Proc. SPIE 5514, 419-427 (2004)
  Optical Trapping and Optical Micromanipulation;
  Kishan Dholakia, Gabriel C. Spalding; Eds.
  [ Link to journal's HTML abstract and PDF-version] [ Link to my personal PDF-copy (244kB)]
   

2003

• Comment on "Fabrication of a Synthetic Nanopore Ion Pump"
  Chr. Rischel and H. Flyvbjerg
  Phys. Rev. Lett. 91, 179801 (2003)
  [ PDF (51kB)] [ Authors' Reply(42kB)]
   
• Single-molecule experiment with optical tweezers:
  improved analysis of the diffusion of the lambda-receptor in E.coli's outer membrane
  L. Oddershede, H. Flyvbjerg, and K. Berg-Sørensen
  J. Phys.: Condens. Matter 15, S1737-S1746 (2003)
  [ PDF (1169kB)]
   
• Unintended filtering in a typical photodiode detection system for optical tweezers
  K. Berg-Sørensen, L. Oddershede, E.-L. Florin, and H. Flyvbjerg
  J. Appl. Phys. 93, 3167-3176 (2003); doi:10.1063/1.1554755
  [ PDF (555kB)]
   
• Hysteresis in Channel Gating
  E. Gudowska-Nowak, H. Flyvbjerg, P. Bennekou, and P. Christophersen
  in Sergey M. Bezrukov (Ed), Unsolved Problems of Noise and Fluctuations,
  UPoN 2002: Third international Conference on Unsolved Problems
  of Noise and Fluctuations in Physics, Biology, and High Technology
  Washington, DC, 3-6 September 2002
  AIP Conference Proceedings Vol.665, pp.305-311 (2003)
   
• Estimating sol component of gelated polymer
  K. Almdal and H. Flyvbjerg
  Report with methods for Chempilots A/S, to be used in connection with
  customer's patent application concerning fabrication of softer contact lenses.
  RISØ, 27 June 2003. 6 pages.
   
• Simple formula for glucose-oxygen concentration ratio after diffusion through gel from blood to reaction volume
  K. Almdal and H. Flyvbjerg
  Report written to attract consultancy for NOVO-Nordisk A/S.
  RISØ, 22 December 2003. 3 pages.
   
• 2002 Activity Report
  H. Flyvbjerg
  The Danish Research Academy's Graduate School of Biophysics
  April ??, 2003, ?? pages. PostScript file
   

2002

• Structural Microtubule Cap: Stability, catastrophe, rescue, and third state
  I. Jánosi, D. Chrétien, and H. Flyvbjerg
  Biophys. J. 83, 1317-1330 (2002)
  [ PDF (509kB)]
   
• Physics of Bio-Molecules and Cells
  H. Flyvbjerg, F. Jülicher, P. Ormos, and F. David (eds)
  Les Houches Session LXXV, 2-27 July 2001
  Series: Les Houches. Ecole d'Eté de Physique Théorique. Vol.75. 570 pages, ISBN 3-540-44132-8
  EDP-Sciences, les Ulis;   Springer-Verlag, Heidelberg   October 2002
   
• Automatic Recognition of Multichannel EEG Signals Using a Committee of Artificial Neural Networks
  B. O. Peters, G. Pfurtscheller, and H. Flyvbjerg
  Pp.157-178 in Vol.III, Signal, Image, and Speech Processing in
  Cornelius T. Leondes (Ed.) Intelligent Systems: Technology and Applications, Vols. I-VI.
  ISBN: 0-8493-1121-7;  CRC Press LLC (2002)
   
• 2001 Activity Report
  H. Flyvbjerg
  The Danish Research Academy's Graduate School of Biophysics
  March 15, 2002, 19 pages.  PostScript file
   

2001

• Automatic differentiation of multichannel EEG signals
  B. O. Peters, G. Pfurtscheller, and H. Flyvbjerg
  IEEE Trans. Biomed. Eng. 48, 111-116 (2001)
   
• Why les Houches?
  H. Flyvbjerg
  Contribution to Livre d'or, pour Cécile
  Ecole des Houches, Cinquantième Anniversaire 1951-2001.
  (Ecole des Houches, 2001).
   
• 2000 Activity Report
  H. Flyvbjerg
  The Danish Research Academy's Graduate School of Biophysics
  January 30, 2001, 36 pages. PostScript file
   

2000

• Classification of movement-related EEG in a memorized delay task experiment
  J. Müller-Gerking, G. Pfurtscheller, and H. Flyvbjerg
  Clin. Neurophysiol. 111, 1353-1365 (2000)
  [ PDF (705 kB)]
   
• Review of Biomathematics. Mathematics of Biostructures and Biodynamics
  edited by S. Andersson, K. Larsson, M. Larsson and M. Jacob.
  Elsevier, Amsterdam, 1999.
  H. Flyvbjerg
  Chemistry and Physics of Lipids 106, 191-192 (2000)
   
• 1999 Activity Report
  H. Flyvbjerg
  The Danish Research Academy's Graduate School of Biophysics
  January 12, 2000, 63 pages. PostScript file
   

1999

• Designing optimal spatial filters for single-trial EEG classification in a movement task
  J. Müller-Gerking, G. Pfurtscheller, and H. Flyvbjerg
  Clin. Neurophysiol. 110, 787-798 (1999)
  [ PDF (??? kB)]
   
• Microtubule's conformational cap
  D. Chrétien, I. Jánosi, J.-C. Taveau, and H. Flyvbjerg
  Cell Struct. Funct. 24, 299-303 (1999)
  [ PDF (??? kB)]
   
• Modeling Microtubule Oscillations
  E. Jobs, D. E. Wolf, and H. Flyvbjerg
  in D. Reguera, J. M. G. Vilar, and J. M. Rubi (Eds.)
  Statistical Mechanics of Biocomplexity
  Proceedings of the XV Sitges Conference Held at Sitges, Barcelona, Spain.
  Springer Lecture Notes in Physics, Vol.527, pp. 46-55.
  Springer-Verlag, 1999.
   
• Modeling Microtubule Oscillations
  E. Jobs, D. E. Wolf, and H. Flyvbjerg
  in Hans Frauenfelder, Gerhard Hummer, and Roderick Garcia (Eds):
  Biological Physics. Third International Symposium,
  Santa Fe, NM, September 1998.
  AIP Conference Proceedings 487 pp. 279-287
  (AIP, Melville, New York, 1999)
   
• 1998 Activity Report
  H. Flyvbjerg
  The Danish Research Academy's Graduate School of Biophysics
  January 20, 1999, 54 pages. Postscript file
   

1998

• Flexibility of inter-protofilament bonds in microtubules assembled from pure tubulin
  D. Chrétien, H. Flyvbjerg, and S. D. Fuller
  Eur. Biophys. J. 27, 490-500 (1998)
   
• Modeling elastic properties of microtubule tips and walls
  M. Jánosi, D. Chrétien, and H. Flyvbjerg
  Eur. Biophys. J. 27, 501-513 (1998)
   
• Mining multi-channel EEG for its information content:
  an ANN-based method for a brain-computer interface
  B. O. Peters, G. Pfurtscheller, and H. Flyvbjerg
  Neural Networks 11, 1429-1433 (1998)
   
• Classification of single EEG trials during preparation of movement
  J. Müller-Gerking, G. Pfurtscheller and H. Flyvbjerg
  Eur. J. Neurosci. 10 (no.Suppl.) 3105 (1998)
   
• Punctuated Equilibria vs Darwin?
  P. Bak and H. Flyvbjerg
  in L. Matsson (Ed.) Nonlinear Cooperative Phenomena in Biological Systems:
  Proceedings of the Adriatico Research Conference, ICTP, Trieste, Italy, 19-22 August 1997
  pp. 68-85 (World Scientific, 1998)
   
• Error Estimates on Averages of Correlated Data
  H. Flyvbjerg
  in J. Kertész and I. Kondor (Eds.) Advances in Computer Simulation
  Lectures Held at the Eötvös Summer School in Budapest, Hungary, 16-20 July 1996
  Springer Lecture Notes in Physics, Vol. 501, pp. 88-103 (Springer-Verlag, 1998).  

1997

• Prompt Recognition of Brain States by their EEG Signals
  B. O. Peters, G. Pfurtscheller, and H. Flyvbjerg
  Theor. Biosci. 116, 290-301 (1997)
   
• Modeling Microtubule Oscillations
  E. Jobs, D. E. Wolf, and H. Flyvbjerg
  Phys. Rev. Lett. 79, 519-522 (1997)
  [ PDF (152kB)] 

• Microtubule dynamics, II. Kinetics of self-assembly
  H. Flyvbjerg and E. Jobs
  Phys. Rev. E 56 (1997) 7083-7099
  [ PDF (325kB)]
   
• Syntopy in Brain Research
  H. Flyvbjerg and E. Po"ppel
  Theory Biosci. 116 (1997) 193-195.
   
• Prompt classification of EEG signals
  based on their spatial distribution prior to movement
  J. Müller-Gerking, G. Pfurtscheller, and H. Flyvbjerg
  Soc. Neurosci. Abstr. 23, 1278 (1997)
   
• Physics of Biological Systems: From Molecules to Species
  H. Flyvbjerg, J. Hertz, M. H. Jensen, O. G. Mouritsen, and K. Sneppen (eds)
  Lecture Notes in Physics, Vol. 480 (Springer-Verlag, 1997)
  (See extremely positive review in Physics Today, January issue, 1998)
   
• Physics--and the physics of biological systems
  H. Flyvbjerg and O. G. Mouritsen
  in H. Flyvbjerg et al. (eds): Physics of Biological Systems: From Molecules to Species
  Lecture Notes in Physics, Vol. 480, pp. 1-7 (Springer-Verlag, 1997)
   
• Microtubule Dynamics
  H. Flyvbjerg
  in H. Flyvbjerg et al.(eds): Physics of Biological Systems: From Molecules to Species,
  Lecture Notes in Physics, Vol. 480, pp. 213-230 (Springer-Verlag, 1997)
   
• Modeling Microtubule Dynamics:
  Doing molecular biology with the tools of theoretical physics
  H. Flyvbjerg
  in R. Hölzle (ed): Dynamik und Strukturbildung in kondensierter Materie.
  Lecture notes from 28.IFF-Ferienkurs, Jülich, 3-14 March, 1997.
  Forschungszentrum Jülich, 1997, pp. F5.1-F5.12. ISBN 3-89336-204-5.
   

1996

• Kinetics of Self-assembling Microtubules:
  An `"Inverse Problem" in Biochemistry
  H. Flyvbjerg, E. Jobs, and S. Leibler
  Proc. Natl. Acad. Sci. (USA) 93 5975-5979 (1996)
  Communicated by Michael E. Fisher in
  [ PDF (170kB)]
   
• Microtubule Dynamics: Caps, Catastrophes, and Coupled Hydrolysis
  H. Flyvbjerg, T. E. Holy, and Leibler
  Phys. Rev. E 54, 5538-5560 (1996)
  [ PDF (407kB)]
   
• Simplest Possible Self-organized Critical System
  H. Flyvbjerg
  Phys. Rev. Lett. 76, 940-943 (1996)
  [ PDF(111kB)]
   
• Flyvbjerg replies
  H. Flyvbjerg
  Phys. Rev. Lett. 77, 4274 (1996)
  [ PDF (54kB)]
   
• Detektering af personelminer v.hj.a. termisk neutron-aktivering
  H. Flyvbjerg
  Kapitel 3.1 (20 sider) i Rapport over Feasibility Studie over Minesøger til Humanitær Minerydning
  Section (in Danish) on physical remote sensing by Thermal Neutron Activation in report on humanitarian demining.
  (Classified, Center for Advanced Technology, RISØ, 1996)
   
• Detektering af personelminer v.hj.a. termografi
  H. Flyvbjerg
  Kapitel 3.3 (? sider) i Rapport over Feasibility Studie over Minesøger til Humanitær Minerydning
  Section (in Danish) on physical remote sensing by thermography in report on humanitarian demining.
  (Classified, Center for Advanced Technology, RISØ, 1996)
   

1995

• Evolution as a Self-organized Critical Phenomenon
  K. Sneppen, P. Bak, H. Flyvbjerg, and M. H. Jensen
  Communicated by Stephen J. Gould in
  Proc. Natl. Acad. Sci. (USA) 92, 5209-5213 (1995)
  [ PDF (size kB)]
   
• Spontaneous Nucleation of Microtubules
  D. Kuchnir Fygenson, H. Flyvbjerg, K. Sneppen, A. Libchaber, and S. Leibler
  Phys. Rev. E 51,, 5058-5063 (1995)
  [ PDF (size kB)]
   
• A Self-Organized Critical Model for Evolution
  H. Flyvbjerg, P. Bak, M. H. Jensen, and K. Sneppen
  in E. Mosekilde and O. G. Mouritsen (eds):
  Modelling the Dynamics of Biological Systems,
  Springer Series on Synergetics, Vol. 65, pp. 269-288
  (Springer-Verlag, 1995)
   
• A Self-organized Critical Pin-Ball Machine,
  H. Flyvbjerg
  in A. J. McKane et al. (eds):
  Scale Invariance, Interfaces and Non-equilibrium Dynamics,
  NATO ASI Series vol. B: Physics, no. 055, pp. 303-313
  (Plenum Publishing, New York, 1995)
   
• "Computational Biophysics" am HLRZ
  I. M. Jánosi, E. Jobs, and H. Flyvbjerg
  Article in the news magazine of Forschungszentrum Jülich,
  KFA intern 2/1995, pp. 16-17
   
• Mikrotubuli
  H. Flyvbjerg
  Article in Danish for general physics readership, from high school students and up.
  KVANT, Fysisk Tidsskrift, October 1995, pp. 8-12 and cover page.
   

1994

J. de Boer, B. Derrida, H. Flyvbjerg, A. Jackson, and T. Wettig
Simple Model of Self-organized Biological Evolution\footnotemark{}
Phys. Rev. Lett. 73 (1994) 906-909
[ PDF]

H. Flyvbjerg, T. E. Holy, and S. Leibler
Stochastic Dynamics of Microtubules: A Model for Caps and Catastrophes
Phys. Rev. Lett. 73 (1994) 2372-2375
[ PDF]

P. Bak, H. Flyvbjerg, and K. Sneppen
Can we model Darwin?
New Scientist, vol. 141, No. 1916 (12 March 1994), pp. 36-39

P. Bak, H. Flyvbjerg, and B. Lautrup
Evolution and co-evolution in a rugged fitness landscape,
in C. G. Langton (ed): Artificial Life III,
Proceedings of the Workshop on Artificial Life, Santa Fe, New Mexico, June 1992.
pp.11-42 (Addison-Wesley, 1994)

See comments on these papers on evolution models in

• News and Views by John Maddox, Punctuated equilibrium by computer, Nature, Vol. 371, 15 September 1994, p. 197
• Physics in action by Luca Peliti, Towards a statistical mechanics of biological evolution? Physics World, March 1994, pp.24-25.
• Interview with H. Flyvbjerg, Die Evolution und die Sandhaufen, by Jens Simon in Frankfurter Allgemeine Zeitung, Seite N2, Mittwoch, 4. September 1996, Nr. 206.
• Section 3.2.1 pp. 40-45 in Tamás Vicsek (Ed.), Fluctuations and Scaling in Biology  (Oxford University Press, 2001).

1993

K. Christensen, H. Flyvbjerg, and Z. Olami
Self-Organized Critical Forest Fire Model: Mean Field Theory and Simulation Results in 1 to 6 Dimensions
Phys. Rev. Lett. 71 (1993) 2737-2741
[ PDF]

H. Flyvbjerg, K. Sneppen, and P. Bak
Mean Field Theory for a Simple Model of Evolution
Phys. Rev. Lett. 71 (1993) 4087-90
[ PDF]

H. Flyvbjerg
Model for Coarsening Froths and Foams
Phys. Rev. E47 (1993) 4037-4054
[ PDF ]
( Re impact of this paper, in addition to Science Citation Index, see also Sect. 7.7, pp. 98-100, and Figs. 7.12 and 7.13 in Dennis Weaire and Stefan Hutzler, The Physics of Foams (Clarendon Press, Oxford, 1999). )

J. Hemmingsson, A. S\o rensen, H. Flyvbjerg, and H. J. Herrmann
What Synchronization?
Europhys. Lett. 23 (1993) 629-634

H. Flyvbjerg
Dynamics of Soap Froth
Physica A 194 (1993) 298-306

P. Bak, H. Flyvbjerg, and B. Lautrup
Evolution and co-evolution in a rugged fitness landscape,
in P. L. Christiansen, J. C. Eilbeck, and R. K. Parmentier (eds):
Future Directions of Non-linear Dynamics in Physical and Biological Systems,
NATO ASI Series, vol. B: Physics, Vol. 312, ch. 87, pp. 489-498.
(Plenum Publishing, New York, 1993)

H. Flyvbjerg
Dynamics of Soap Froth,
in Siegfried Hess (ed): Statistical Physics. Invited papers from STATPHYS 18
North-Holland, Elsevier Science Publishers B.V. 1993, pp. 298-306

H. Flyvbjerg
Mean Field and Random Neighbour Models in Field Theory and Statistical Mechanics
Review article for habilitation thesis (1993). Available from the author.

1992

H. Flyvbjerg and B. Lautrup
Evolution in a Rugged Fitness Landscape \footnotemark{}
Phys. Rev. A46 (1992) 6714-6723
[ PDF]

P. Bak, H. Flyvbjerg, and B. Lautrup
Co-evolution in a Rugged Fitness Landscape \footnotemark{}
Phys. Rev. A46 (1992) 6724-6730
[ PDF]

P. Bak and H. Flyvbjerg
Self-Organization of Cellular Magnetic Domain Patterns
Phys. Rev. A45 (1992) 2192-2200

H. Flyvbjerg and P. Bak
Self-Organization of Magnetic Domain Patterns
Physica A 185 (1992) 3-10

F. Larsen and H. Flyvbjerg
Efficient Evaluation of Feynman Diagrams on Lattices
Comp. Phys. Comm. 69 (1992) 59-64

H. H. Mikkelsen and H. Flyvbjerg
Exact Stopping Cross Section of the Quantum Harmonic Oscillator for a Penetrating Point Charge of Arbitrary Strength
Phys. Rev. A45 (1992) 3025-3031

1991

H. Flyvbjerg
Some Exact Results for the O(N)-symmetric non-linear sigma-model to ${\cal O}(1/N)$
Nucl. Phys. B348 (1991) 714-736

M. Klomfass, U. M. Heller, and H. Flyvbjerg
Interpolating Between O(N)-symmetric sigma-models with N=1,2,3
Phys. Lett. B258 (1991) 386-390

M. Klomfass, U. M. Heller, and H. Flyvbjerg
Interpolating Between Ising, XY-, and Non-linear sigma-models
Nucl. Phys. B360 (1991) 264-282

H. Flyvbjerg and F. Larsen
Mass Gap of O(N) sigma-models in 2d: Support for Exact Results from 1/N-expansion
Phys. Lett. B266 (1991) 92-98

H. Flyvbjerg and F. Larsen
Magnetic Susceptibility of O(N) sigma-models in 2d: Weak Coupling Results from 1/N-expansion
Phys. Lett. B266 (1991) 99-106

H. Flyvbjerg and C. Jeppesen
A Solvable Model for Coarsening Soap Froths and Other Domain Boundary Networks in Two Dimensions
Phys. Scr. T38 (1991) 49-54

H. Flyvbjerg and Benny Lautrup
Storebæltsbroen og Langelandssund
(renamed "Primitiv måling i Storebælt" by the newspaper). Article in major Danish newspaper:
Politiken, Sunday, 26 May 1991

H. Flyvbjerg, C. Kristjansen, and F. Larsen
1/N-expansions of sigma-models in 2 and 4 dimensions: taking them to their technical limits
Nucl. Phys. B (Proc. Suppl.) 20 (1991) 44-47

M. Klomfass, U. M. Heller, and H. Flyvbjerg
Interpolating between O(N)-symmetric sigma-models with N=1,2,3
Nucl. Phys. B (Proc. Suppl.) 20 (1991) 685-688

1990

J.-M. Drouffe and H. Flyvbjerg
Dyson-Schwinger Equations for the Non-linear sigma-model
Nucl. Phys. B332 (1990) 687-708

H. Flyvbjerg
Scaling vs. Asymptotic Scaling in the Non-linear sigma-model in 2d
Phys. Lett. B245 (1990) 533-544

H. Flyvbjerg and S. Varsted
1/N-expansion of the Non-linear sigma-model: the First Three Orders
Nucl. Phys. B344 (1990) 646-664

H. H. Mikkelsen and H. Flyvbjerg
Barkas Effect in a Central Collision: Exact Numerical Results and the Tenth Order Born Series
Phys. Rev. A42 (1990) 3962-3970

C. Jeppesen, O. G. Mouritsen, and H. Flyvbjerg
Computer Simulation of Vortex Formation During Domain Growth
Phys. Scr. T33 (1990) 180-184

Z. Burda, H. Flyvbjerg, and J. Jurkiewicz
Classification of Networks of Automata by Dynamical Mean Field Theory
J. Phys. A: Math. Gen. 23 (1990) 3073-3081

H. Flyvbjerg
Book review: Quantum Mechanics on the Personal Computer,
by S. Brandt and H. D. Damen, Springer, 1989
Comp. Phys. Comm. 61 (1990) 437-439

H. Flyvbjerg and S. Varsted
O(N)-symmetric Non-linear sigma-model to Three Leading Orders in 1/N,
in P. H. Damgaard, H. Hüffel and A. Rosenblum (eds):
Probabilistic Methods in Quantum Field Theory and Quantum Gravity
Plenum Press, New York, 1990, pp. 153-166

H. Flyvbjerg and S. Varsted
1/N-expansion of the Non-linear sigma-model: the First Three Orders
Nucl. Phys. B (Proc. Suppl.) 17 (1990) 343-346

1989

H. Flyvbjerg and H. G. Petersen
Error Estimates on Averages of Correlated Data
J. Chem. Phys. 91 (1989) 461-466
(To see impact of this paper, in addition to Science Citation Index,
see pp.~89, 93--94, 382--383, Appendix~D.3, and Case Study~4 in
Daan Frenkel and Berend Smit, Understanding Molecular Simulation: From Algorithms to Applications
(Academic Press 1996) doi:10.1063/1.457480
[ Personal PDF copy (620kB)]

H. Flyvbjerg
Dyson-Schwinger Equations for the Non-linear sigma-model: Perturbative Solution on a Finite Lattice
J. Phys. A: Math. Gen. 22 (1989) 3393-3398

H. Flyvbjerg
1/N-expansion of the Non-linear sigma-model
Phys. Lett. B219 (1989) 323-328

H. Flyvbjerg
Recent Results for Random Networks of Automata
Acta Phys. Pol. B20 (1989) 321-349

C. Jeppesen, H. Flyvbjerg, and O. G. Mouritsen
Dynamics of Ordering in Highly Degenerate Models with Anisotropic Grain Boundary Potential:
Effects of Temperature and Vortex Formation
Phys. Rev. B40 (1989) 9070-9079
[ PDF]

H. Flyvbjerg
Large-N Expansion of the Non-linear sigma-model,
in Z. Horvath, L. Palla and A. Patkós (eds):
Frontiers in Nonperturbative Field Theory
World Scientific, 1989, pp. 302-312

H. Flyvbjerg
The Non-linear sigma-model to O(1)+O(1/N)
Nucl. Phys. B (Proc. Suppl.) 9 (1989) 653-657

1988

H. Flyvbjerg
An Order Parameter for Networks of Automata
J. Phys. A: Math. Gen. 21 (1988) L955-960

H. Flyvbjerg and N. J. Kj\ae r
Exact Solution of Kauffman's Model with Connectivity One
J. Phys. A: Math. Gen. 21 (1988) 1695-1718

J.-M. Drouffe and H. Flyvbjerg
Resummation of the 1/N-expansion of the Non-linear sigma-model by Dyson-Schwinger Equations
Phys. Lett. B206 (1988) 285-289

H. Flyvbjerg
Random Complex Automata: Analogy with Spin Glasses,
in R. M. J. Cotterill (ed): Computer Simulation in Brain Science
Cambridge Univ. Press, 1988, pp. 240-248,

J.-M. Drouffe and H. Flyvbjerg
Recent Results for the Two-dimensional sigma-model using Dyson-Schwinger Equations
Nucl. Phys. B (Proc. Suppl.) 4 (1988) 612-616

1987

B. Derrida and H. Flyvbjerg
The Random Map Model: a Disordered Model with Deterministic Mechanics
J. Physique 48 (1987) 971-978

B. Derrida and H. Flyvbjerg
Statistical Properties of Randomly Broken Objects and of Multi-valley Structures in Disordered Systems
J. Phys. A: Math. Gen. 20 (1987) 5273-88

B. Derrida and H. Flyvbjerg
Distribution of Local Magnetization in Random Networks of Automata
J. Phys. A: Math. Gen. 20 (1987) L1107-L1112

H. Flyvbjerg and B. Lautrup
Kunstig intelligens
Feature article in major Danish newspaper:
Berlingske Tidende, 15 October, 1987

1986

B. Derrida and H. Flyvbjerg
Multi-valley Structure in Kauffman's Model: Analogy with Spin Glasses
J. Phys. A: Math. Gen. 19 (1986) L1001-L1008

1985

B. Derrida and H. Flyvbjerg
A New Real Space Renormalization Method and its Julia Set
J. Phys. A: Math. Gen. 18 (1985) L313-L318

H. Flyvbjerg
Character Table for the 1080-element Point-group-like Subgroup of SU(3)
J. Math. Phys. 26 (1985) 2985-2989

1984

H. Flyvbjerg
Group Space Decimation -- A way to simulate QCD by the 1080 element subgroup of SU(3)?
Nucl. Phys. B243 (1984) 350-364

H. Flyvbjerg
Internal Space Decimation for Lattice Gauge Theories
Nucl. Phys. B240 [FS12] (1984) 481

H. Flyvbjerg, P. Mansfield, and B. S\"oderberg
High Precision Mean Field Results for Lattice Gauge Theories
Nucl. Phys. B240 [FS12] (1984) 171-188

H. Flyvbjerg
How to Do Mean Field Theory in Feynman Gauge, and doing it for U(1) with corrections to fourth order
Nucl. Phys. B235 [FS11] (1984) 331-357

1983

H. Flyvbjerg and V. Marinari
Complex Analytic Structure of Variant Action SU(2) Lattice Gauge Theory in Four Dimensions
Phys. Lett. 132B (1983) 385-388

H. Flyvbjerg
Mean Field Theory with Radiative Corrections for Lattice Gauge Theories
Acta Phys. Pol. B14 (1983) 179-191

1982

H. Flyvbjerg, B. Lautrup, and J.-B. Zuber
Mean Field with Corrections in Lattice Gauge Theory
Phys. Lett. 110B (1982) 279-283

H. Flyvbjerg
Two Critical Field Strengths in the Copenhagen Vacuum
Nucl Phys. B197 (1982) 155-173

1981

H. Flyvbjerg and J. L. Petersen
On the Structure of the QCD Vacuum in the Large-N Limit
Nucl. Phys. B186 (1981) 236-246

H. Flyvbjerg
Two New Families of Solitons of an Inherent Quantum Nature
Nucl. Phys. B184 (1981) 351-364

1980

J. Ambjørn and H. Flyvbjerg
't Hooft's Non Abelian Magnetic Flux Has Zero Classical Energy
Phys. Lett. 97B (1980) 241-245

H. Flyvbjerg
Improved QCD Vacuum for Gauge Groups SU(3) and SU(4)
Nucl. Phys. B176 (1980) 379-396